Creating new versions of HealthOmics annotation stores

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You can create new versions of annotation stores to collect different versions of your annotation databases. This helps you organize your annotation data, which is updated regularly.

To create a new version of an existing annotation store, use the create-annotation-store-version API as shown in the following example.

aws omics create-annotation-store-version \
     --name my_annotation_store \
     --version-name my_version  

You will get the following response with the annotation store version ID, confirming that a new version of your annotation has been created.

{
     "creationTime": "2023-07-21T17:15:49.251040+00:00",
     "id": "3b93cdef69d2",
     "name": "my_annotation_store",
     "reference": {
         "referenceArn": "arn:aws:omics:us-west-2:555555555555:referenceStore/6505293348/reference/5987565360"
     },
     "status": "CREATING",
     "versionName": "my_version"
}             

To update the description of an annotation store version, you can use update-annotation-store-version to add updates to an annotation store version.

aws omics update-annotation-store-version \
    --name my_annotation_store \
    --version-name my_version \
    --description "New Description"    

You will receive the following response, confirming that the annotation store version has been updated.

{
     "storeId": "4934045d1c6d",
     "id": "2a3f4a44aa7b",
     "description":"New Description",
     "status": "ACTIVE",
     "name": "my_annotation_store",
     "versionName": "my_version",
     "creation Time": "2023-07-21T17:20:59.380043+00:00",
     "updateTime": "2023-07-21T17:26:17.892034+00:00"
}              

To view the details of an annotation store version, use get-annotation-store-version.

aws omics get-annotation-store-version --name my_annotation_store --version-name my_version              

You will receive a response with the version name, status, and other details.

{
     "storeId": "4934045d1c6d",
     "id": "2a3f4a44aa7b",
     "status": "ACTIVE",
     "versionArn": "arn:aws:omics:us-west-2:555555555555:annotationStore/my_annotation_store/version/my_version",
     "name": "my_annotation_store",
     "versionName": "my_version",
     "creationTime": "2023-07-21T17:15:49.251040+00:00",
     "updateTime": "2023-07-21T17:15:56.434223+00:00",
     "statusMessage": "",
     "versionSizeBytes": 0
    }        
      

To view all versions of an annotation store, you can use list-annotation-store-versions, as shown in the following example.

aws omics list-annotation-store-versions --name my_annotation_store

You will receive a response with the following information

{
  "annotationStoreVersions": [
    {
     "storeId": "4934045d1c6d",
     "id": "2a3f4a44aa7b",
     "status": "CREATING",
     "versionArn": "arn:aws:omics:us-west-2:555555555555:annotationStore/my_annotation_store/version/my_version_2",
     "name": "my_annotation_store",
     "versionName": "my_version_2",
     "creation Time": "2023-07-21T17:20:59.380043+00:00",
     "versionSizeBytes": 0
    },
    {
     "storeId": "4934045d1c6d",
     "id": "4934045d1c6d",
     "status": "ACTIVE",
     "versionArn": "arn:aws:omics:us-west-2:555555555555:annotationStore/my_annotation_store/version/my_version_1",
     "name": "my_annotation_store",
     "versionName": "my_version_1",
     "creationTime": "2023-07-21T17:15:49.251040+00:00",
     "updateTime": "2023-07-21T17:15:56.434223+00:00",
     "statusMessage": "",
     "versionSizeBytes": 0
    }
}             

If you no longer need an annotation store version, you can use delete-annotation-store-versions to delete an annotation store version, as shown in the following example.

aws omics delete-annotation-store-versions --name my_annotation_store --versions my_version  

If the store version is deleted without errors, you will receive the following response.

{
  "errors": []
}                

If there are errors, you will receive a response with the details of the errors, as shown.

{
  "errors": [
    {
      "versionName": "my_version",
      "message": "Version with versionName: my_version was not found."
    }
  ]
}  

If you try to delete an annotation store version that has an active import job, you will receive a response with an error, as shown.

{
  "errors": [
    {
      "versionName": "my_version",
      "message": "version has an inflight import running"
    }
  ]
}  

In this case, you can force deletion of the annotation store version, as shown in the following example.

aws omics delete-annotation-store-versions --name my_annotation_store --versions my_version --force