AWS Tools for Windows PowerShell
Command Reference

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Synopsis

Calls the Amazon Omics CreateSequenceStore API operation.

Syntax

New-OMICSSequenceStore
-Name <String>
-S3AccessConfig_AccessLogLocation <String>
-Description <String>
-ETagAlgorithmFamily <ETagAlgorithmFamily>
-FallbackLocation <String>
-SseConfig_KeyArn <String>
-PropagatedSetLevelTag <String[]>
-Tag <Hashtable>
-SseConfig_Type <EncryptionType>
-ClientToken <String>
-Select <String>
-Force <SwitchParameter>
-ClientConfig <AmazonOmicsConfig>

Description

Creates a sequence store and returns its metadata. Sequence stores are used to store sequence data files called read sets that are saved in FASTQ, BAM, uBAM, or CRAM formats. For aligned formats (BAM and CRAM), a sequence store can only use one reference genome. For unaligned formats (FASTQ and uBAM), a reference genome is not required. You can create multiple sequence stores per region per account. The following are optional parameters you can specify for your sequence store:
  • Use s3AccessConfig to configure your sequence store with S3 access logs (recommended).
  • Use sseConfig to define your own KMS key for encryption.
  • Use eTagAlgorithmFamily to define which algorithm to use for the HealthOmics eTag on objects.
  • Use fallbackLocation to define a backup location for storing files that have failed a direct upload.
  • Use propagatedSetLevelTags to configure tags that propagate to all objects in your store.
For more information, see Creating a HealthOmics sequence store in the Amazon Web Services HealthOmics User Guide.

Parameters

-ClientConfig <AmazonOmicsConfig>
Amazon.PowerShell.Cmdlets.OMICS.AmazonOmicsClientCmdlet.ClientConfig
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-ClientToken <String>
An idempotency token used to dedupe retry requests so that duplicate runs are not created.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-Description <String>
A description for the store.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-ETagAlgorithmFamily <ETagAlgorithmFamily>
The ETag algorithm family to use for ingested read sets. The default value is MD5up. For more information on ETags, see ETags and data provenance in the Amazon Web Services HealthOmics User Guide.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-FallbackLocation <String>
An S3 location that is used to store files that have failed a direct upload. You can add or change the fallbackLocation after creating a sequence store. This is not required if you are uploading files from a different S3 bucket.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-Force <SwitchParameter>
This parameter overrides confirmation prompts to force the cmdlet to continue its operation. This parameter should always be used with caution.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-Name <String>
A name for the store.
Required?True
Position?1
Accept pipeline input?True (ByValue, ByPropertyName)
-PropagatedSetLevelTag <String[]>
The tags keys to propagate to the S3 objects associated with read sets in the sequence store. These tags can be used as input to add metadata to your read sets. Starting with version 4 of the SDK this property will default to null. If no data for this property is returned from the service the property will also be null. This was changed to improve performance and allow the SDK and caller to distinguish between a property not set or a property being empty to clear out a value. To retain the previous SDK behavior set the AWSConfigs.InitializeCollections static property to true.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesPropagatedSetLevelTags
-S3AccessConfig_AccessLogLocation <String>
Location of the access logs.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-Select <String>
Use the -Select parameter to control the cmdlet output. The default value is '*'. Specifying -Select '*' will result in the cmdlet returning the whole service response (Amazon.Omics.Model.CreateSequenceStoreResponse). Specifying the name of a property of type Amazon.Omics.Model.CreateSequenceStoreResponse will result in that property being returned. Specifying -Select '^ParameterName' will result in the cmdlet returning the selected cmdlet parameter value.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-SseConfig_KeyArn <String>
An encryption key ARN.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-SseConfig_Type <EncryptionType>
The encryption type.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-Tag <Hashtable>
Tags for the store. You can configure up to 50 tags. Starting with version 4 of the SDK this property will default to null. If no data for this property is returned from the service the property will also be null. This was changed to improve performance and allow the SDK and caller to distinguish between a property not set or a property being empty to clear out a value. To retain the previous SDK behavior set the AWSConfigs.InitializeCollections static property to true.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesTags

Common Credential and Region Parameters

-AccessKey <String>
The AWS access key for the user account. This can be a temporary access key if the corresponding session token is supplied to the -SessionToken parameter.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesAK
-Credential <AWSCredentials>
An AWSCredentials object instance containing access and secret key information, and optionally a token for session-based credentials.
Required?False
Position?Named
Accept pipeline input?True (ByValue, ByPropertyName)
-EndpointUrl <String>
The endpoint to make the call against.Note: This parameter is primarily for internal AWS use and is not required/should not be specified for normal usage. The cmdlets normally determine which endpoint to call based on the region specified to the -Region parameter or set as default in the shell (via Set-DefaultAWSRegion). Only specify this parameter if you must direct the call to a specific custom endpoint.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
-NetworkCredential <PSCredential>
Used with SAML-based authentication when ProfileName references a SAML role profile. Contains the network credentials to be supplied during authentication with the configured identity provider's endpoint. This parameter is not required if the user's default network identity can or should be used during authentication.
Required?False
Position?Named
Accept pipeline input?True (ByValue, ByPropertyName)
-ProfileLocation <String>
Used to specify the name and location of the ini-format credential file (shared with the AWS CLI and other AWS SDKs)If this optional parameter is omitted this cmdlet will search the encrypted credential file used by the AWS SDK for .NET and AWS Toolkit for Visual Studio first. If the profile is not found then the cmdlet will search in the ini-format credential file at the default location: (user's home directory)\.aws\credentials.If this parameter is specified then this cmdlet will only search the ini-format credential file at the location given.As the current folder can vary in a shell or during script execution it is advised that you use specify a fully qualified path instead of a relative path.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesAWSProfilesLocation, ProfilesLocation
-ProfileName <String>
The user-defined name of an AWS credentials or SAML-based role profile containing credential information. The profile is expected to be found in the secure credential file shared with the AWS SDK for .NET and AWS Toolkit for Visual Studio. You can also specify the name of a profile stored in the .ini-format credential file used with the AWS CLI and other AWS SDKs.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesStoredCredentials, AWSProfileName
-Region <Object>
The system name of an AWS region or an AWSRegion instance. This governs the endpoint that will be used when calling service operations. Note that the AWS resources referenced in a call are usually region-specific.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesRegionToCall
-SecretKey <String>
The AWS secret key for the user account. This can be a temporary secret key if the corresponding session token is supplied to the -SessionToken parameter.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesSK, SecretAccessKey
-SessionToken <String>
The session token if the access and secret keys are temporary session-based credentials.
Required?False
Position?Named
Accept pipeline input?True (ByPropertyName)
AliasesST

Outputs

Amazon.Omics.Model.CreateSequenceStoreResponse
This cmdlet returns an Amazon.Omics.Model.CreateSequenceStoreResponse object containing multiple properties.
AWS Tools for PowerShell User Guide

Supported Version

AWS Tools for PowerShell: 2.x.y.z