Run the TCGA Glue workflow - Guidance for Multi-Omics and Multi-Modal Data Integration and Analysis on AWS

Run the TCGA Glue workflow

This guidance includes an example AWS Glue workflow to process the TCGA data. You can run the workflow using either the AWS Command Line Interface (AWS CLI) or the AWS Glue console.

To start the workflow using the AWS CLI, run the following command: 

aws glue start-workflow-run --name TCGAWorkflow

Use the following process to run the crawler in the AWS Glue console.

  1. Sign in to the AWS Glue console.

  2. Choose Workflows from the left navigation menu. On the Workflows page, select the name of the example workflow —TCGAWorkflow.

  3. Choose Actions and select Run.